Detailed information of SNP:
|
SNP ID:
sf0819353793(Gbrowse)
Chromosome: chr08 Position: 19353793 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.83% | 45.17% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819353793 | C->T | INTERGENIC | None |