Detailed information of SNP:
|
SNP ID:
sf0819363881(Gbrowse)
Chromosome: chr08 Position: 19363881 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 97.00% | 3.00% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 477 | 92.03% | 7.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 90.40% | 9.60% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819363881 | T->A | INTERGENIC | None |