Detailed information of SNP:
|
SNP ID:
sf0819364203(Gbrowse)
Chromosome: chr08 Position: 19364203 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.84% | 41.16% |
| All Indica | 799 | 34.67% | 65.33% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 25.33% | 74.67% |
| Indica II | 213 | 23.00% | 77.00% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819364203 | A->C | INTERGENIC | None |