Detailed information of SNP:
|
SNP ID:
sf0819368979(Gbrowse)
Chromosome: chr08 Position: 19368979 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.25% | 35.75% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 17.71% | 82.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 12.24% | 87.76% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819368979 | T->C | LOC_Os08g31320(LOC_Os08g31320.1) | Synonymous |