Detailed information of SNP:
|
SNP ID:
sf0819375396(Gbrowse)
Chromosome: chr08 Position: 19375396 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 60.96% | 39.04% |
| All Indica | 776 | 32.47% | 67.53% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 23.01% | 76.99% |
| Indica II | 206 | 21.36% | 78.64% |
| Indica Intermediate | 205 | 60.49% | 39.51% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819375396 | T->A | INTERGENIC | None |