Detailed information of SNP:
|
SNP ID:
sf0819390655(Gbrowse)
Chromosome: chr08 Position: 19390655 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 53.57% | 46.43% |
| All Indica | 785 | 85.99% | 14.01% |
| All Japonica | 494 | 11.94% | 88.06% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 369 | 82.11% | 17.89% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 206 | 86.89% | 13.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 44.57% | 55.43% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819390655 | G->A | INTERGENIC | None |