Detailed information of SNP:
|
SNP ID:
sf0819404731(Gbrowse)
Chromosome: chr08 Position: 19404731 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.42% | 34.58% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 497 | 10.26% | 89.74% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819404731 | A->T | LOC_Os08g31390(LOC_Os08g31390.1) | INTRON |