Detailed information of SNP:
|
SNP ID:
sf0819405272(Gbrowse)
Chromosome: chr08 Position: 19405272 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 93.96% | 6.04% |
| All Indica | 752 | 91.76% | 8.24% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 55 | 80.00% | 20.00% |
| Indica I | 359 | 92.48% | 7.52% |
| Indica II | 194 | 91.24% | 8.76% |
| Indica Intermediate | 199 | 90.95% | 9.05% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819405272 | T->C | LOC_Os08g31390(LOC_Os08g31390.1) | INTRON |