Detailed information of SNP:
|
SNP ID:
sf0819405324(Gbrowse)
Chromosome: chr08 Position: 19405324 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 97.27% | 2.73% |
| All Indica | 779 | 95.89% | 4.11% |
| All Japonica | 488 | 99.18% | 0.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 204 | 95.10% | 4.90% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819405324 | G->A | LOC_Os08g31390(LOC_Os08g31390.1) | Non-Synonymous SNP |