Detailed information of SNP:
|
SNP ID:
sf0819410461(Gbrowse)
Chromosome: chr08 Position: 19410461 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 94.99% | 5.01% |
| All Indica | 743 | 92.06% | 7.94% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 342 | 92.69% | 7.31% |
| Indica II | 199 | 90.95% | 9.05% |
| Indica Intermediate | 202 | 92.08% | 7.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819410461 | T->A | LOC_Os08g31400(LOC_Os08g31400.1) | Non-Synonymous SNP |