Detailed information of SNP:
|
SNP ID:
sf0819411157(Gbrowse)
Chromosome: chr08 Position: 19411157 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 55.27% | 44.73% |
| All Indica | 735 | 27.48% | 72.52% |
| All Japonica | 495 | 90.91% | 9.09% |
| Aus | 62 | 88.71% | 11.29% |
| Indica I | 333 | 27.93% | 72.07% |
| Indica II | 205 | 23.41% | 76.59% |
| Indica Intermediate | 197 | 30.96% | 69.04% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 64.13% | 35.87% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819411157 | G->A | LOC_Os08g31400(LOC_Os08g31400.1) | Synonymous |