Detailed information of SNP:
|
SNP ID:
sf0819429159(Gbrowse)
Chromosome: chr08 Position: 19429159 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 97.53% | 2.47% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 92.94% | 7.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 90.72% | 9.28% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819429159 | C->T | LOC_Os08g31410(LOC_Os08g31410.7) | Synonymous |
| sf0819429159 | C->T | LOC_Os08g31410(LOC_Os08g31410.6) | Synonymous |
| sf0819429159 | C->T | LOC_Os08g31410(LOC_Os08g31410.5) | Synonymous |
| sf0819429159 | C->T | LOC_Os08g31410(LOC_Os08g31410.4) | Synonymous |
| sf0819429159 | C->T | LOC_Os08g31410(LOC_Os08g31410.3) | Synonymous |
| sf0819429159 | C->T | LOC_Os08g31410(LOC_Os08g31410.2) | Synonymous |
| sf0819429159 | C->T | LOC_Os08g31410(LOC_Os08g31410.1) | Synonymous |