Detailed information of SNP:
|
SNP ID:
sf0819437080(Gbrowse)
Chromosome: chr08 Position: 19437080 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1263 | 71.26% | 28.74% |
| All Indica | 661 | 48.11% | 51.89% |
| All Japonica | 493 | 98.99% | 1.01% |
| Aus | 57 | 92.98% | 7.02% |
| Indica I | 306 | 47.39% | 52.61% |
| Indica II | 171 | 32.16% | 67.84% |
| Indica Intermediate | 184 | 64.13% | 35.87% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819437080 | C->T | INTERGENIC | None |