Detailed information of SNP:
|
SNP ID:
sf0819437081(Gbrowse)
Chromosome: chr08 Position: 19437081 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1317 | 85.65% | 14.35% |
| All Indica | 749 | 82.38% | 17.62% |
| All Japonica | 475 | 95.79% | 4.21% |
| Aus | 41 | 21.95% | 78.05% |
| Indica I | 364 | 81.87% | 18.13% |
| Indica II | 204 | 91.18% | 8.82% |
| Indica Intermediate | 181 | 73.48% | 26.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 74 | 79.73% | 20.27% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819437081 | A->G | INTERGENIC | None |