Detailed information of SNP:
|
SNP ID:
sf0819442160(Gbrowse)
Chromosome: chr08 Position: 19442160 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.53% | 24.47% |
| All Indica | 798 | 67.67% | 32.33% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819442160 | C->T | INTERGENIC | None |