Detailed information of SNP:
|
SNP ID:
sf0819442344(Gbrowse)
Chromosome: chr08 Position: 19442344 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 91.04% | 8.96% |
| All Indica | 797 | 89.71% | 10.29% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819442344 | A->G | INTERGENIC | None |