Detailed information of SNP:
|
SNP ID:
sf0819448358(Gbrowse)
Chromosome: chr08 Position: 19448358 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.70% | 41.30% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 17.71% | 82.29% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819448358 | T->A | INTERGENIC | None |