Detailed information of SNP:
|
SNP ID:
sf0819453464(Gbrowse)
Chromosome: chr08 Position: 19453464 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 95.82% | 4.18% |
| All Indica | 795 | 98.87% | 1.13% |
| All Japonica | 493 | 97.57% | 2.43% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 331 | 96.37% | 3.63% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819453464 | G->A | INTERGENIC | None |