Detailed information of SNP:
|
SNP ID:
sf0819460408(Gbrowse)
Chromosome: chr08 Position: 19460408 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 83.97% | 16.03% |
| All Indica | 797 | 76.91% | 23.09% |
| All Japonica | 496 | 91.94% | 8.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819460408 | C->T | INTERGENIC | None |