Detailed information of SNP:
|
SNP ID:
sf0819468185(Gbrowse)
Chromosome: chr08 Position: 19468185 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 80.65% | 19.35% |
| All Indica | 798 | 75.56% | 24.44% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819468185 | G->C | INTERGENIC | None |