Detailed information of SNP:
|
SNP ID:
sf0819475360(Gbrowse)
Chromosome: chr08 Position: 19475360 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.86% | 39.14% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819475360 | A->G | INTERGENIC | None |