Detailed information of SNP:
|
SNP ID:
sf0819482175(Gbrowse)
Chromosome: chr08 Position: 19482175 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.94% | 40.06% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819482175 | A->G | INTERGENIC | None |