Detailed information of SNP:
|
SNP ID:
sf0819494224(Gbrowse)
Chromosome: chr08 Position: 19494224 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 60.44% | 39.56% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819494224 | C->A | INTERGENIC | None |