Detailed information of SNP:
|
SNP ID:
sf0819494395(Gbrowse)
Chromosome: chr08 Position: 19494395 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 68.08% | 31.92% |
| All Indica | 795 | 64.53% | 35.47% |
| All Japonica | 496 | 80.85% | 19.15% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 372 | 75.00% | 25.00% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819494395 | A->G | INTERGENIC | None |