Detailed information of SNP:
|
SNP ID:
sf0819510541(Gbrowse)
Chromosome: chr08 Position: 19510541 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 59.49% | 40.51% |
| All Indica | 774 | 91.73% | 8.27% |
| All Japonica | 493 | 8.52% | 91.48% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 366 | 93.99% | 6.01% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 200 | 85.00% | 15.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 91 | 35.16% | 64.84% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819510541 | C->T | INTERGENIC | None |