Detailed information of SNP:
|
SNP ID:
sf0819532333(Gbrowse)
Chromosome: chr08 Position: 19532333 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 73.62% | 26.38% |
| All Indica | 796 | 64.20% | 35.80% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 375 | 66.40% | 33.60% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 209 | 47.37% | 52.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819532333 | G->A | INTERGENIC | None |