Detailed information of SNP:
|
SNP ID:
sf0819533302(Gbrowse)
Chromosome: chr08 Position: 19533302 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 61.58% | 38.42% |
| All Indica | 796 | 93.84% | 6.16% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819533302 | C->T | INTERGENIC | None |