Detailed information of SNP:
|
SNP ID:
sf0819535392(Gbrowse)
Chromosome: chr08 Position: 19535392 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 72.62% | 27.38% |
| All Indica | 798 | 63.03% | 36.97% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 374 | 66.04% | 33.96% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819535392 | C->T | INTERGENIC | None |