Detailed information of SNP:
|
SNP ID:
sf0819538110(Gbrowse)
Chromosome: chr08 Position: 19538110 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 65.63% | 34.37% |
| All Indica | 795 | 52.08% | 47.92% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 371 | 50.13% | 49.87% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819538110 | G->A | INTERGENIC | None |