Detailed information of SNP:
|
SNP ID:
sf0819554081(Gbrowse)
Chromosome: chr08 Position: 19554081 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 60.58% | 39.42% |
| All Indica | 797 | 88.46% | 11.54% |
| All Japonica | 496 | 23.19% | 76.81% |
| Aus | 65 | 27.69% | 72.31% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 334 | 15.27% | 84.73% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819554081 | A->T | LOC_Os08g31600(LOC_Os08g31600.1) | INTRON |