Detailed information of SNP:
|
SNP ID:
sf0819558412(Gbrowse)
Chromosome: chr08 Position: 19558412 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 61.30% | 38.70% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 495 | 6.67% | 93.33% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819558412 | A->G | INTERGENIC | None |