Detailed information of SNP:
|
SNP ID:
sf0819573721(Gbrowse)
Chromosome: chr08 Position: 19573721 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 66.45% | 33.55% |
| All Indica | 799 | 90.61% | 9.39% |
| All Japonica | 495 | 29.09% | 70.91% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 334 | 22.16% | 77.84% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819573721 | A->G | INTERGENIC | None |