Detailed information of SNP:
|
SNP ID:
sf0819586558(Gbrowse)
Chromosome: chr08 Position: 19586558 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 66.60% | 33.40% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 28.57% | 71.43% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819586558 | T->C | INTERGENIC | None |