Detailed information of SNP:
|
SNP ID:
sf0819599733(Gbrowse)
Chromosome: chr08 Position: 19599733 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.07% | 46.93% |
| All Indica | 798 | 88.10% | 11.90% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819599733 | G->A | INTERGENIC | None |