Detailed information of SNP:
|
SNP ID:
sf0819600326(Gbrowse)
Chromosome: chr08 Position: 19600326 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.23% | 45.77% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819600326 | T->C | INTERGENIC | None |