Detailed information of SNP:
|
SNP ID:
sf0819602220(Gbrowse)
Chromosome: chr08 Position: 19602220 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 52.97% | 47.03% |
| All Indica | 795 | 88.30% | 11.70% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 371 | 83.29% | 16.71% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819602220 | C->T | INTERGENIC | None |