Detailed information of SNP:
|
SNP ID:
sf0819606144(Gbrowse)
Chromosome: chr08 Position: 19606144 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 91.54% | 8.46% |
| All Indica | 793 | 99.87% | 0.13% |
| All Japonica | 497 | 76.66% | 23.34% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 77.61% | 22.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819606144 | G->T | INTERGENIC | None |