Detailed information of SNP:
|
SNP ID:
sf0819652123(Gbrowse)
Chromosome: chr08 Position: 19652123 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 69.33% | 30.67% |
| All Indica | 792 | 82.95% | 17.05% |
| All Japonica | 497 | 47.89% | 52.11% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 369 | 78.59% | 21.41% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 50.45% | 49.55% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819652123 | C->T | INTERGENIC | None |