Detailed information of SNP:
|
SNP ID:
sf0819674095(Gbrowse)
Chromosome: chr08 Position: 19674095 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 53.14% | 46.86% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819674095 | A->G | INTERGENIC | None |