Detailed information of SNP:
|
SNP ID:
sf0819677030(Gbrowse)
Chromosome: chr08 Position: 19677030 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.01% | 47.99% |
| All Indica | 799 | 86.61% | 13.39% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819677030 | A->G | INTERGENIC | None |