Detailed information of SNP:
|
SNP ID:
sf0819677527(Gbrowse)
Chromosome: chr08 Position: 19677527 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 51.70% | 48.30% |
| All Indica | 794 | 86.27% | 13.73% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 373 | 84.72% | 15.28% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 208 | 81.25% | 18.75% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819677527 | C->T | INTERGENIC | None |