Detailed information of SNP:
|
SNP ID:
sf0819686396(Gbrowse)
Chromosome: chr08 Position: 19686396 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 93.54% | 6.46% |
| All Indica | 742 | 88.68% | 11.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 338 | 86.09% | 13.91% |
| Indica II | 207 | 90.34% | 9.66% |
| Indica Intermediate | 197 | 91.37% | 8.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819686396 | T->C | INTERGENIC | None |