Detailed information of SNP:
|
SNP ID:
sf0819752518(Gbrowse)
Chromosome: chr08 Position: 19752518 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 94.80% | 5.20% |
| All Indica | 791 | 96.59% | 3.41% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 53 | 30.19% | 69.81% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 7 | 85.71% | 14.29% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819752518 | C->T | INTERGENIC | None |