Detailed information of SNP:
|
SNP ID:
sf0819760449(Gbrowse)
Chromosome: chr08 Position: 19760449 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 71.53% | 28.47% |
| All Indica | 772 | 52.46% | 47.54% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 364 | 51.37% | 48.63% |
| Indica II | 205 | 40.00% | 60.00% |
| Indica Intermediate | 203 | 67.00% | 33.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819760449 | C->A | LOC_Os08g31880(LOC_Os08g31880.1) | SNPs that introduce stop codons |