Detailed information of SNP:
|
SNP ID:
sf0819766321(Gbrowse)
Chromosome: chr08 Position: 19766321 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 86.06% | 13.94% |
| All Indica | 789 | 80.61% | 19.39% |
| All Japonica | 495 | 93.74% | 6.26% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 91.94% | 8.06% |
| Indica II | 210 | 76.67% | 23.33% |
| Indica Intermediate | 207 | 64.25% | 35.75% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819766321 | T->C | INTERGENIC | None |