Detailed information of SNP:
|
SNP ID:
sf0819790747(Gbrowse)
Chromosome: chr08 Position: 19790747 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 77.26% | 22.74% |
| All Indica | 789 | 70.09% | 29.91% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 368 | 59.51% | 40.49% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 208 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819790747 | A->T | INTERGENIC | None |