Detailed information of SNP:
|
SNP ID:
sf0819826814(Gbrowse)
Chromosome: chr08 Position: 19826814 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 76.04% | 23.96% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 34.00% | 66.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 18.51% | 81.49% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819826814 | A->T | LOC_Os08g31970(LOC_Os08g31970.1) | UTR_3_PRIME |
| sf0819826814 | A->T | LOC_Os08g31970(LOC_Os08g31970.2) | UTR_3_PRIME |