Detailed information of SNP:
|
SNP ID:
sf0819846278(Gbrowse)
Chromosome: chr08 Position: 19846278 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 73.81% | 26.19% |
| All Indica | 789 | 84.66% | 15.34% |
| All Japonica | 497 | 70.82% | 29.18% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 204 | 75.00% | 25.00% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819846278 | A->G | INTERGENIC | None |