Detailed information of SNP:
|
SNP ID:
sf0819850107(Gbrowse)
Chromosome: chr08 Position: 19850107 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.74% | 49.26% |
| All Indica | 799 | 16.90% | 83.10% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 17.60% | 82.40% |
| Indica II | 213 | 5.16% | 94.84% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819850107 | T->C | INTERGENIC | None |