Detailed information of SNP:
|
SNP ID:
sf0819859048(Gbrowse)
Chromosome: chr08 Position: 19859048 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 84.01% | 15.99% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 486 | 55.76% | 44.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 326 | 42.02% | 57.98% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819859048 | C->T | INTERGENIC | None |